As I rummaged through my pantry one morning, a lightbulb moment struck: what if I could whip up a quick snack that was not only delicious but packed with protein? Enter my High-Protein Bagel Bites—a delightful solution to those frantic mornings! These little gems are not only gluten-free but also come together in just 15 minutes. Perfect for when you need something substantial yet healthy, they offer a lovely crunch paired with a creamy filling that keeps you energized throughout the day. Whether you’re craving a savory bite or a sweet twist, these bagel bites can be easily customized to fit your mood. What flavor are you thinking of trying first?

Why are High-Protein Bagel Bites a must-try?
Simplicity at Its Best: With just a handful of ingredients, these bagel bites come together effortlessly in under 15 minutes.
High-Protein Boost: Each bite packs a solid 8g of protein, making them a nutritious snack that fills you up without weighing you down.
Endless Variations: Feel free to mix in fresh herbs or sweet spices; the possibilities are endless!
Crowd-Pleasing Flavor: The creamy center surrounded by a crunchy crust satisfies both savory and sweet cravings. Serve them alongside a refreshing Greek yogurt parfait for a complete snack experience!
Perfectly Portable: Whether you’re rushing out the door or enjoying a cozy snack at home, they’re easy to grab and go.
High-Protein Bagel Bites Ingredients
For the Dough
- Gluten-Free Flour – Ensure it’s a good quality blend that includes xanthan gum to avoid grittiness.
- Baking Powder – Fresh baking powder is essential for the right rise in your high-protein bagel bites.
- Unflavored Protein Powder – This is your secret weapon for a protein boost without altering the flavor significantly; vanilla can be a tasty substitute.
- Plain Unsweetened Greek Yogurt – Provides moisture and a protein boost, creating an ideal dough texture; try thick coconut yogurt for a dairy-free alternative.
For the Filling
- Cream Cheese – The core filling that gives a creamy texture; opt for block-style for best results. A dairy-free cream cheese can substitute for a vegan option.
For Topping
- Everything But The Bagel Seasoning – This adds classic bagel flavor; sprinkle generously on top before air frying for the best results.
Optional
- Egg – Use for an egg wash to enhance browning and help the seasoning stick; this can be omitted for a vegan-friendly version.
These high-protein bagel bites are just waiting to be made in your kitchen! They are not just quick snacks; they’re a warm hug on a plate, ready to energize your day.
Step‑by‑Step Instructions for High-Protein Bagel Bites
Step 1: Preheat Air Fryer
Begin by setting your air fryer to 350°F (175°C). This temperature will ensure that your High-Protein Bagel Bites achieve the perfect golden and crispy exterior. Allow it to preheat for about 5 minutes while you prepare your dough.
Step 2: Mix Dry Ingredients
In a mixing bowl, combine 1 cup of gluten-free flour, 1 tablespoon of baking powder, and 1 scoop of unflavored protein powder. Whisk these dry ingredients together until they are well blended. This foundation will provide structure for the bagel bites, giving them that satisfying chewy texture.
Step 3: Incorporate Greek Yogurt
Add 3/4 cup of plain unsweetened Greek yogurt to the dry mixture. Using a spatula or your hands, mix until the ingredients come together to form a sticky dough. This should take about 2-3 minutes; you’ll know it’s ready when the dough holds its shape while also appearing slightly tacky.
Step 4: Shape Dough
Divide the dough into 10 equal pieces, about 30g each, and roll them into balls. This step requires a gentle touch to maintain the dough’s texture. After shaping the balls, set them aside on a clean surface while you prepare for the filling.
Step 5: Fill with Cream Cheese
Take each dough ball and flatten it gently with your palm. Place approximately 1 teaspoon of cream cheese in the center of each flattened dough. Carefully fold the edges over the filling, pinching to seal. Roll the filled dough back into a ball to ensure the cream cheese stays enclosed.
Step 6: Prepare for Cooking
Brush each bagel bite with an egg wash or lightly spray them with oil for a golden finish. Generously sprinkle Everything But The Bagel seasoning on top for that classic flavor. This step not only adds taste but makes your High-Protein Bagel Bites visually appealing.
Step 7: Air Fry
Place the bagel bites in the air fryer basket, ensuring they are spaced apart for even cooking. Air fry for 5-6 minutes, or until they are golden brown and puffed up. Keep an eye on them towards the end of the cooking time; they should have a lovely crunchy surface when done.
Step 8: Cool Slightly Before Serving
Once cooked, carefully remove the High-Protein Bagel Bites from the air fryer and let them cool for a couple of minutes. This cooling period allows the filling to set slightly, making them easier to handle—and enhances the flavors before you dive in.

Storage Tips for High-Protein Bagel Bites
Room Temperature: Keep uneaten High-Protein Bagel Bites in an airtight container at room temperature for up to 4 days to maintain their delightful texture.
Fridge: If you prefer them chilled, store them in the fridge in an airtight container for up to 5 days. Reheat before serving for the best flavor.
Freezer: For longer storage, freeze the bagel bites in a single layer on a baking sheet, then transfer to a freezer bag for up to 3 months.
Reheating: To enjoy them warm, reheat frozen High-Protein Bagel Bites in an air fryer at 350°F for about 5-6 minutes, or until heated through and crispy again.
Expert Tips for High-Protein Bagel Bites
• Fresh Ingredients: Always check the freshness of your baking powder and gluten-free flour for optimal rise and flavor in your High-Protein Bagel Bites.
• Measuring Matters: Use a kitchen scale to accurately measure the dough portions, ensuring consistency in size and cooking time.
• Avoid Sogginess: If you’re using wet Greek yogurt, strain it before mixing. This prevents sogginess in the final product, giving your bagel bites the right texture.
• Customize Fillings: Don’t hesitate to get creative with your cream cheese filling! Experiment with different flavors like chive or berry to elevate your High-Protein Bagel Bites.
• Batch Cooking: Make a double batch of these bites; they freeze beautifully! Reheat in the air fryer for a quick snack anytime.
What to Serve with High-Protein Bagel Bites
Transform your High-Protein Bagel Bites into a delightful meal with these perfectly paired sides that enhance their flavor and texture.
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Creamy Avocado Toast: Smooth avocado on whole grain bread adds a healthy fat component that perfectly balances the protein-packed bagel bites.
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Fresh Fruit Salad: A vibrant mix of seasonal fruits brings a refreshing sweetness, complementing the savory bites and adding a touch of brightness to your snack.
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Tangy Greek Yogurt Parfait: Layered with granola and berries, a yogurt parfait not only boosts protein further but also creates a deliciously creamy and crunchy contrast.
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Spicy Roasted Chickpeas: Crunchy and full of flavor, these add a delightful textural element and a kick of heat that pairs harmoniously with the creaminess of the bagel bites.
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Crunchy Veggie Sticks with Hummus: The crispness of carrot and cucumber sticks dipped in creamy hummus offers a refreshing crunch and a healthy complement to your snack.
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Zesty Lemonade or Iced Tea: A refreshing drink option, the citrusy zing of lemonade or the herbal notes in iced tea enhances the overall experience, cleanse your palate, and uplifts the flavors.
Your High-Protein Bagel Bites deserve these delicious companions to make every bite a celebration of flavors!
High-Protein Bagel Bites Variations & Substitutions
Feel free to add your personal touch to these delightful bites; the possibilities are endless!
- Sweet Twist: Mix cinnamon and raisins into the dough for a delightful sweet treat. Imagine enjoying these soft bites with a cup of coffee!
- Herb-Infused: Incorporate fresh herbs like dill or chives for a savory pop of flavor, creating a unique snack that is perfect for brunch gatherings.
- Cream Cheese Flavors: Experiment with different cream cheese varieties such as smoked salmon or strawberry to create a rich filling that excites your taste buds.
- Spicy Kick: Add a pinch of red pepper flakes to the dough for an added heat that balances perfectly with the creamy filling. Perfect for those who love a savory punch!
- Dairy-Free Delight: Substitute thick coconut yogurt for Greek yogurt and dairy-free cream cheese for a vegan-friendly option, ensuring everyone can enjoy these bites.
- Nutty Crunch: Mix in some chopped nuts like walnuts or pecans to the dough for added texture and healthy fats, giving your bites a satisfying crunch.
- Savory Seeds: Top with sesame or poppy seeds along with Everything But The Bagel seasoning for an even richer flavor profile. It’s the ultimate way to elevate your snack!
- Sweeten Up: Stir in a bit of honey or maple syrup into the dough for a subtly sweet flavor, perfect for enjoying with a fruit salad or yogurt on the side.
These variations are designed to spark your creativity in the kitchen! For a different snacking route, try making Frozen Greek Bites or a comforting Spinach Dip. Your taste buds will thank you!
Make Ahead Options
These High-Protein Bagel Bites are perfect for meal prep! You can prepare the dough up to 24 hours in advance by mixing the dry ingredients and the Greek yogurt, then storing it in an airtight container in the refrigerator. The bagel bites can also be assembled with cream cheese filling and placed in the fridge for up to 3 days before cooking. Just ensure they are covered to maintain moisture. When you’re ready to enjoy, simply air fry them straight from the fridge for 5-6 minutes until golden brown. You’ll have delicious, protein-packed snacks ready to go, saving you time during busy weeknights!

High-Protein Bagel Bites Recipe FAQs
How do I select the right gluten-free flour?
Absolutely! When choosing gluten-free flour, look for blends that include xanthan gum. This ingredient helps provide structure and prevents grittiness. Popular brands often list a combination of rice flour, tapioca flour, and potato starch—these create the best texture for your bagel bites.
How should I store leftover High-Protein Bagel Bites?
To maintain their delightful texture, store uneaten High-Protein Bagel Bites in an airtight container at room temperature for up to 4 days. If you prefer them chilled, refrigerate them for a maximum of 5 days—just remember to reheat for that fresh-out-of-the-oven flavor!
Can I freeze High-Protein Bagel Bites?
Yes, you can! To freeze, arrange the bagel bites in a single layer on a baking sheet and place them in the freezer until solid. Once frozen, transfer them to a freezer bag for up to 3 months. When you’re ready to enjoy, simply reheat them in the air fryer at 350°F for about 5-6 minutes until heated through and crispy again.
What if my dough is too sticky?
No worries! If you find your dough overly sticky, sprinkle in a little more gluten-free flour while kneading until it achieves a workable consistency. It’s important to maintain the delicate balance—too much flour can lead to a dry texture, so add just a tablespoon at a time until you’re happy with the consistency.
Are High-Protein Bagel Bites suitable for people with common allergies?
Very! These bagel bites can easily accommodate various dietary restrictions. To make them dairy-free, substitute Greek yogurt and cream cheese with thick coconut yogurt and dairy-free cream cheese. Always check your protein powder for allergens—many are gluten-free, but it’s best to confirm.

High-Protein Bagel Bites for Quick, Guilt-Free Snacking
Ingredients
Equipment
Method
- Preheat Air Fryer to 350°F (175°C) and allow it to preheat for about 5 minutes.
- In a mixing bowl, combine gluten-free flour, baking powder, and protein powder, and whisk until blended.
- Add Greek yogurt to dry mixture and mix until a sticky dough forms, about 2-3 minutes.
- Divide dough into 10 equal pieces, roll them into balls, and set aside.
- Flatten each dough ball, place cream cheese in center, and seal edges to form balls again.
- Brush each ball with egg wash or oil, then sprinkle Everything But The Bagel seasoning on top.
- Place bagel bites in air fryer basket and air fry for 5-6 minutes until golden brown.
- Remove bites from air fryer and cool for a couple of minutes before serving.

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